DOGMA Dual Organaller GenoMe Annotator
Dual Organellar GenoMe Annotator














Userid:











Stacia K. Wyman
swyman@partners.org

DOGMA citation:
Automatic annotation of
organellar genomes with
DOGMA. Wyman SK,
Jansen RK, Boore JL,
Bioinformatics 2004
20(17):3252-3255
DOGMA is for annotating plant chloroplast and animal mitochondrial genomes.

NEW! To annotate plant mitochondrial genomes, check out Andy Alverson's Mitofy software:
http://dogma.ccbb.utexas.edu/mitofy.

New Annotation

Enter your userid and a new, unique identifier name for the dataset. This is the name which you will use to retrieve the annotation later.
Userid:
Unique identifier for dataset:
Genome type: Mitochondrial Chloroplast
Gapped alignment? Yes No
Genetic Code for Blastx:
Percent identity cutoff for protein coding genes:
Percent identity cutoff for RNAs:
E-value:
Number of blast hits to return:

Select input file (Fasta format) :  

Mitochondria-specific options:

Reorient to cox1? Yes No
COVE threshold for mt tRNAs:

Chloroplast genomes take about 5-10 minutes to finish in DOGMA. Please do not stop it (or close the browser window) until you get the page telling you the run is complete.